PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G175100.1
Common NameB456_008G175100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 289aa    MW: 31854.2 Da    PI: 8.9995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G175100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-105490242
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKae 42
                        r +h+  E+rRR++iN++f+ Lr+ +P+     ++K + a+
  Gorai.008G175100.1 54 RSKHSVTEQRRRSKINERFQILRDRIPNT----DQKRDTAS 90
                        899*************************7....45555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-115094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-125093IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-851100No hitNo description
PROSITE profilePS5088810.58252102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-75491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.987221288IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRRGKASQEE EEFGSKKTGP SSFHTLSVNA NTNTNTNINN EADGKDSDKA KAIRSKHSVT  60
EQRRRSKINE RFQILRDRIP NTDQKRDTAS FLLEEKVKKY EGSYQGWSSE PTKLMPWRNS  120
HWRGQSFVDQ PQAIKNDPGL GSTFSGKLDE NNINITPSMI ASALDPSEAD PIRDNEQAEL  180
AVPIQGGHPL QRPVSEAQTT VCLTSNDTLN QQDDLAIEGG TISISSVYSQ GLLNTLTQAL  240
QRTGLDLSQA NISVQVDLGK RSNRGLTSFA KESANGEDSN PVRKRLKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045739.11e-131BES1-interacting Myc-like protein 2
SwissprotQ9CAA43e-93BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0D2PWJ10.0A0A0D2PWJ1_G
STRINGVIT_01s0010g00540.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-92BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]